PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G06390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 502aa    MW: 55939.3 Da    PI: 9.2019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G06390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1133.1e-35962381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 
                      lp+G++F+Ptd+el+ e+L++kv+++       ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+         
  OGLUM01G06390.1  96 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvqK 187
                      799************.99******9996775553333333666646**********.555666799******************7566666443 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OGLUM01G06390.1 188 GETRWHKTGKTRPVMV-SGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 238
                      3778************.9999**********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-3891257IPR003441NAC domain
PROSITE profilePS5100534.2796257IPR003441NAC domain
PfamPF023654.5E-1697238IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MYTSPTLLAL SFALLLLILL LYYSSSLLYS QLATRRRLTH ACARSLPDAY ESGMNRGHIS  60
SSELIDAKLE ERRISTAKHC PSCGNKLDCK PDWVGLPAGV KFDPTDQELI EHLEAKVREE  120
GSRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT TGTRKRRKIQ  180
TECDVQKGET RWHKTGKTRP VMVSGRQKGC KKILVLYTNF GKHRKPEKTN WVMHQYHLGD  240
LEEEKEGELV VCKIFYQTQP RQCSWSSDRG GGAAATASAV TTAAVQQDQQ RRRDSGSGSC  300
SSTRDHEVSA TSYSTAGYAV AAAVEMQHLK HAADHFSFAP FRKSFEEVGI SGDQVHSNQL  360
GRSEQQHAGQ EQQPHRPLLA TTTAVPATAF LISRPTNPVS NIVPPAMQHA SVVLDHDQFH  420
VPAILLHHDK FQQQQQQKLD RRSAGLEELI MGCTSSSTKG VVYTCTFRKL QFLTPKRQNG  480
LTSHTGLLTT RIIMDSSNKA GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-129423813140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615070.10.0PREDICTED: NAC domain-containing protein 73 isoform X3
TrEMBLA0A0D9Y4F20.0A0A0D9Y4F2_9ORYZ; Uncharacterized protein
STRINGBGIOSGA002220-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-117NAC domain containing protein 75